many many thanks for your replies guys.
I suspect the cause of the first issue was a short somewhere.
So, after a late night last night, swearing, soldering, rewiring shimming, swearing etc, finally got the gun running.
Trouble was it would lock up very soon after firing.
Checked everything, piston moving freely, gears spinning freely with no side to side play (so assume shimmed ok?)
So, put the original motor back in and all seemed well, so I boxed it back up. Still had a higher ROF than originally and I've learnt something along the way.
Got the gun reassembled.......misfeeding massively!!!!!!.......(had installed a delay chip too, forgot to say)
Anyway, long story short I've ended up taking in somewhere, and upon talking to one of the techs it turns out I shouldnt have been trying to run the 13:1 gears and high speed motor together anyway.
After a long conversation he's going to put 18:1 gears in, stick with the high speed motor, do a proper shim job, install prowin hop up with prometheus rubber, tight bore barrel, put in mosfet and anything else it needs to get it up to scratch in terms of speed and reliability.
Been a steep (and relatively exspensive) learning curve. But fully take on board the comments about doing a build in stages, will definately bare that in mind next time (this wont have put me off lol)
Thanks again guys, your advice was very much appreciated.